refactor(sql-check): drop `predicate_effect`; keep read-only, bind and permission fixes by anandgupta42 · Pull Request #1446 · AltimateAI/altimate-code

anandgupta42 · 2026-10-12T20:28:29Z

Issue for this PR

Closes #

Type of change

Bug fix
New feature
Refactor / code improvement
Documentation

What does this PR do?

Scope change. This PR originally added a sql_check predicate_effect mode. That mode is removed: every review round found another server-side definition (view bodies, cast functions, operators, catalog reads) that validating the SQL text could not see, it was already opt-in and off by default, and the agent never used it. What remains are the generic fixes that work surfaced, each with its own regression tests.

What changed (was, then now):

Permission prompts. A request with several patterns prompted on the first pattern that needed a prompt, so a deny rule matching a later pattern could be skipped. Now every pattern is evaluated before any prompt is published, and a deny on any pattern wins (permission/next.ts).
PostgreSQL bind parameters. Connector.execute dropped bind values on the regular and byte-limited query paths. Now they are forwarded on both.
Read-only execution on SQLite and DuckDB. readOnly was honoured only on PostgreSQL. Now SQLite runs with query_only (restoring the previous setting afterwards) and DuckDB runs inside a read-only transaction, refusing to start inside a caller's open transaction.
SQL tokenizer. CR-terminated comments, PostgreSQL backtick operators and PostgreSQL/DuckDB array syntax are tokenized correctly, which the shared read validation and statement splitting rely on.
sql_check errors. Validation failures return a readable message instead of a raw exception.

Base. Stacked on feat/analyst-harness-dab-2026-10 (#1441).

Behaviour deltas. sql_check keeps its existing checks (fanout, keys, grain, nulls, coverage) with no new parameters or config. SQLite and DuckDB reads issued with readOnly now refuse writes. A permission request with a later denied pattern is now denied instead of prompted.

How did you verify your code works?

packages/opencode: test/altimate/tools, test/config, test/permission, test/agent/analyst-data-explorer.test.ts and the query-deadline suite.
packages/drivers: full suite, including the PostgreSQL bind-forwarding and read-only tests.
bun run typecheck, the upstream marker check and git diff --check.
No reference to the removed mode remains in packages/.

Screenshots / recordings

Not a UI change.

Checklist

I have tested my changes locally
I have not included unrelated changes in this PR

🤖 Generated with Claude Code

Note

Medium Risk
Changes touch SQL execution guards, permission deny semantics, and read-only enforcement across three engines—behavior shifts (stricter reads, multi-pattern denies) are intentional but affect agent SQL tooling paths.

Overview
This PR tightens read-only warehouse execution and sql_check safety, plus fixes permission evaluation and PostgreSQL parameter forwarding.

Drivers. ExecuteOptions.readOnly now applies on SQLite (PRAGMA query_only, restored after each call) and DuckDB (helper runs BEGIN TRANSACTION READ ONLY then ROLLBACK, and refuses nested use inside an open transaction). DuckDB/SQLite drivers pass readOnly through to the local engine child. PostgreSQL again forwards bind parameters on both normal and byte-limited streaming query paths.

sql_check. Warehouse queries always use readOnly: true for SQLite, DuckDB, and Postgres. Read validation is stricter: broader denial of PostgreSQL side-effect pg_* / dblink / large-object calls, rejection of U&"..." function-name escapes, and tokenizer fixes so CR-ended comments, Postgres backticks, and Postgres/DuckDB ARRAY[...] do not hide writes. Invalid tool args return a clear sql_check invalid input message before connecting.

Permissions. PermissionNext.ask evaluates every pattern before showing a prompt; any matching deny wins instead of prompting on an earlier pattern only.

^{Reviewed by Cursor Bugbot for commit e8eafe4. Bugbot is set up for automated code reviews on this repo. Configure here.}

…removes Analysts are told that a filter which removes nothing usually means the wrong column, but there was no cheap way to verify it. `sql_check` gains an opt-in `predicate_effect` check: given an explicit read-only population (`base_sql`, a SELECT or a table reference) and one to eight boolean predicates, it runs a single aggregate probe SELECT COUNT(*), COUNT(*) FILTER (WHERE p1), …, COUNT(*) FILTER (WHERE p1 AND …) and reports rows kept and removed per predicate plus the combined count, flagging `this predicate removes no rows at this population`. NULL counts as not kept and the output says so; an empty population is reported as such. - No rewriting of the caller's WHERE clause; predicates are validated as bare expressions through the existing read-only validator and the connection's dialect, and all supplied SQL goes through the `sql_execute` permission request before routing. - Bounded: SQLite, DuckDB and Postgres only; a catalog row estimate above `max_rows_scanned` (default 5,000,000) for a bare table refuses with a suggestion to narrow the population; query timeouts return `skipped: timeout` instead of failing the caller. - Analyst prompt: the existing "every clause must bite" sentence points at the check and says a vacuous filter is a reason to profile an alternative column, not to invent an exclusion. Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

…uts and all-row removal Review follow-ups to the predicate-effect probe: - When the catalog row estimate is unknown (views, SQLite without ANALYZE, unanalysed or partitioned Postgres tables, ambiguous relations) the output says `row_estimate: unknown — probe runs under the query timeout` instead of proceeding silently. - Strict-schema fillers (`max_rows_scanned: 0`, blank predicates, empty `base_sql`) are treated as absent and produce the tool's own message, never a raw schema validation dump. - A predicate that removes every row is flagged; counts over a `LIMIT`ed SELECT population say so. - Postgres branch covered by tests (probe shape, `to_regclass`/`reltuples` guard, unknown-estimate path). - The analyst prompt sentence ends with a period. Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

coderabbitai · 2026-10-12T20:28:37Z

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chatgpt-codex-connector · 2026-10-12T20:28:42Z

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github-actions · 2026-10-12T20:28:43Z

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- - - - - - - - - - - - - - - - - - - - - - - - -

codex · `9ae87189`

- - - - - - - - - - - - - - - - - - - - - - - - -
                    AIRECEIPTS                    
 “# AGENTS.md instructions<INSTRUCTIONS># Resea…” 
    Codex · Oct 12 2026 23:08:35 UTC · 2m 16s     
            (unattributed usage) 100%             
         cache served 91% of input tokens         

(unattributed usage)........948,477 tok  (0 calls)
exec..............................0 tok  (9 calls)
send_message......................0 tok  (4 calls)

caveat: Codex request envelopes did not reconcile — request-level pricing disabled
--------------------------------------------------
TOTAL..................................948,477 tok
no price table matched
- - - - - - - - - - - - - - - - - - - - - - - - -
                npx aireceipts-cli                
         github.com/anandgupta42/receipts         
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codex · `0377aa8e`

- - - - - - - - - - - - - - - - - - - - - - - - -
                    AIRECEIPTS                    
 “# AGENTS.md instructions<INSTRUCTIONS># Resea…” 
    Codex · Oct 12 2026 23:08:42 UTC · 2m 28s     
            (unattributed usage) 100%             
         cache served 94% of input tokens         

(unattributed usage)........992,777 tok  (0 calls)
exec.............................0 tok  (12 calls)
send_message......................0 tok  (4 calls)

caveat: Codex request envelopes did not reconcile — request-level pricing disabled
--------------------------------------------------
TOTAL..................................992,777 tok
no price table matched
- - - - - - - - - - - - - - - - - - - - - - - - -
                npx aireceipts-cli                
         github.com/anandgupta42/receipts         
- - - - - - - - - - - - - - - - - - - - - - - - -

codex · `01792805`

- - - - - - - - - - - - - - - - - - - - - - - - -
                    AIRECEIPTS                    
 “# AGENTS.md instructions<INSTRUCTIONS># Resea…” 
    Codex · Oct 12 2026 23:13:35 UTC · 1m 56s     
            (unattributed usage) 100%             
         cache served 92% of input tokens         

(unattributed usage)........517,613 tok  (0 calls)
exec..............................0 tok  (7 calls)
send_message......................0 tok  (3 calls)

caveat: Codex request envelopes did not reconcile — request-level pricing disabled
--------------------------------------------------
TOTAL..................................517,613 tok
no price table matched
- - - - - - - - - - - - - - - - - - - - - - - - -
                npx aireceipts-cli                
         github.com/anandgupta42/receipts         
- - - - - - - - - - - - - - - - - - - - - - - - -

Generated by aireceipts

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…nd keeps caller positions Independent-review follow-ups: - A bare-table population is wrapped under the table's own name, so a predicate copied from the caller's WHERE clause (`orders.kind = 'a'`) works; SELECT populations keep the `t` alias and the description says so. - The limited-population note fires only for a top-level `LIMIT`, `FETCH FIRST … ROWS ONLY` or `TOP` on the population statement, not for a LIMIT inside a subquery. - Blank predicate entries are reported as skipped at their original position, so predicate numbers match the caller's array. Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

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… in predicates and populations A review finding of the highest severity tier: on PostgreSQL connections allowed to signal other backends, `pg_terminate_backend(pid)` or `pg_cancel_backend(pid)` passes the read-only validator as a boolean expression. The shared validator now blocks backend-signalling calls (including escaped function names and CR-comment variants) before any query runs; harmless literals, comments, column names and scalar expressions remain accepted. Tests: `rejects backend-signaling predicate <case> before query execution` and the population variant (14 cases). Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

…' into feat/analyst-v10-probe

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…trol and dblink functions Three review findings of the highest severity tier, each with red-first tests: - The probe executes with the connector's read-only mode, so a user-defined function that writes cannot be reached through a predicate. - `pg_promote` and `pg_reload_conf` are denied in predicates and populations. - `dblink_send_query`, `dblink_connect` and `dblink_connect_u` are denied in predicates and populations. Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

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kilo-code-bot · 2026-10-12T21:53:45Z

Code Review Summary

Status: No Issues Found | Recommendation: Merge

Files Reviewed (10 files)

packages/drivers/src/duckdb.ts
packages/drivers/src/local-engine-child-source.ts
packages/drivers/src/postgres.ts
packages/drivers/src/sqlite.ts
packages/drivers/src/types.ts
packages/drivers/test/postgres-readonly.test.ts
packages/opencode/src/altimate/tools/sql-check.ts
packages/opencode/src/altimate/tools/sql-tokenize.ts
packages/opencode/src/permission/next.ts
packages/opencode/test/altimate/tools/sql-check.test.ts

Previous Review Summaries (8 snapshots, latest commit 5df7cfa)

Current summary above is authoritative. Previous snapshots are kept for context only.

Previous review (commit `5df7cfa`)

Status: 1 Issue Found | Recommendation: Address before merge

Overview

Severity	Count
CRITICAL	0
WARNING	1
SUGGESTION	0

Issue Details (click to expand)

WARNING

File	Line	Issue
`packages/opencode/src/altimate/tools/sql-check.ts`	962	Operator catalog check matches by name only, refusing built-in operators when a same-named extension operator exists

Files Reviewed (10 files)

packages/core/src/v1/config/config.ts
packages/drivers/src/duckdb.ts
packages/drivers/src/local-engine-child-source.ts
packages/drivers/src/postgres.ts
packages/drivers/src/sqlite.ts
packages/drivers/src/types.ts
packages/opencode/src/altimate/prompts/analyst.txt
packages/opencode/src/altimate/tools/sql-check.ts - 1 issue
packages/opencode/src/altimate/tools/sql-tokenize.ts
packages/opencode/src/permission/next.ts

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Previous review (commit `214e47e`)

Status: No Issues Found | Recommendation: Merge

Files Reviewed (2 files)

packages/opencode/src/altimate/tools/sql-check.ts
packages/opencode/test/altimate/tools/sql-check.test.ts

Previous review (commit `9ae7d77`)

Status: No Issues Found | Recommendation: Merge

Files Reviewed (3 files)

packages/drivers/src/local-engine-child-source.ts
packages/opencode/src/altimate/tools/sql-check.ts
packages/opencode/test/altimate/sql-check-postgres.test.ts

Previous review (commit `5a69583`)

Status: 2 Issues Found | Recommendation: Address before merge

Overview

Severity	Count
CRITICAL	0
WARNING	1
SUGGESTION	1

Issue Details (click to expand)

WARNING

File	Line	Issue
`packages/opencode/src/altimate/tools/sql-check.ts`	23	`ls_\w*dir` whitelists PostgreSQL filesystem-directory-listing functions (`pg_ls_dir`, `pg_ls_logdir`, `pg_ls_waldir`, `pg_ls_archive_statusdir`, `pg_ls_tmpdir`), leaking server filesystem paths and contradicting the stated "file functions denied" design.

SUGGESTION

File	Line	Issue
`packages/opencode/src/altimate/tools/sql-check.ts`	25	`lo_creat` is redundant with `lo_\w`; likewise `indexes_size` with `\w_size` and `get_userbyid` with `get_\w*`.

Files Reviewed (2 files)

packages/opencode/src/altimate/tools/sql-check.ts - 2 issues
packages/opencode/test/altimate/sql-check-postgres.test.ts - 0 issues

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Previous review (commit `c9cfe17`)

Status: 1 Issue Found | Recommendation: Address before merge

Overview

Severity	Count
CRITICAL	0
WARNING	1
SUGGESTION	0

Issue Details (click to expand)

WARNING

File	Line	Issue
`packages/opencode/src/altimate/tools/sql-check.ts`	190	`lo_import_with_oid` and `lo_creat` remain callable large-object write functions not matched by the denylist.

Files Reviewed (2 files)

packages/opencode/src/altimate/tools/sql-check.ts - 1 issue
packages/opencode/test/altimate/sql-check-postgres.test.ts - 0 issues

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Previous review (commit `2f824cf`)

Status: 6 Issues Found | Recommendation: Address before merge

Overview

Severity	Count
CRITICAL	0
WARNING	5
SUGGESTION	1

Issue Details (click to expand)

WARNING

File	Line	Issue
`packages/opencode/src/altimate/tools/sql-check.ts`	190	`lo_from_bytea` is missing from the large-object write denylist.
`packages/opencode/src/altimate/tools/sql-check.ts`	249	PostgreSQL parent-table estimates omit inherited child rows scanned by the probe.
`packages/opencode/src/altimate/tools/sql-check.ts`	286	SQLite partial-index statistics can understate a full table's scanned rows.
`packages/opencode/src/altimate/tools/sql-check.ts`	386	Timeout handling discards a local engine's in-memory or session-state loss warning.
`packages/opencode/src/altimate/tools/sql-check.ts`	224	A subquery or CTE LIMIT that bounds the population receives no caveat.

SUGGESTION

File	Line	Issue
`packages/opencode/src/altimate/tools/sql-check.ts`	331	The unconditional `readOnly: true` makes the Postgres-only `readOnly` spread redundant.

Files Reviewed (2 files)

packages/opencode/src/altimate/tools/sql-check.ts - 6 issues
packages/opencode/test/altimate/sql-check-postgres.test.ts - 0 issues

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Previous review (commit `8e56751`)

Status: 4 Issues Found | Recommendation: Address before merge

Overview

Severity	Count
CRITICAL	0
WARNING	4
SUGGESTION	0

Issue Details (click to expand)

WARNING

File	Line	Issue
`packages/opencode/src/altimate/tools/sql-check.ts`	249	PostgreSQL parent-table estimates omit inherited child rows scanned by the probe.
`packages/opencode/src/altimate/tools/sql-check.ts`	286	SQLite partial-index statistics can understate a full table's scanned rows.
`packages/opencode/src/altimate/tools/sql-check.ts`	385	Timeout handling discards a local engine's in-memory or session-state loss warning.
`packages/opencode/src/altimate/tools/sql-check.ts`	224	A subquery or CTE LIMIT that bounds the population receives no caveat.

Files Reviewed (8 files)

packages/drivers/src/duckdb.ts - 0 issues
packages/drivers/src/local-engine-child-source.ts - 0 issues
packages/drivers/src/sqlite.ts - 0 issues
packages/drivers/src/types.ts - 0 issues
packages/opencode/src/altimate/tools/sql-check.ts - 4 issues carried forward
packages/opencode/src/permission/next.ts - 0 issues
packages/opencode/test/altimate/sql-check-postgres.test.ts - 0 issues
packages/opencode/test/altimate/sql-check-predicate-effect.test.ts - 0 issues

Fix these issues in Kilo Cloud

The three prior critical findings are fixed at the current HEAD. No new inline findings were raised; existing comments were not duplicated. Review based on source and existing tests only; no code or tests were executed.

Previous review (commit `3fa390c`)

Status: 7 Issues Found | Recommendation: Address before merge

Overview

Severity	Count
CRITICAL	3
WARNING	4
SUGGESTION	0

Issue Details (click to expand)

CRITICAL

File	Line	Issue
`packages/opencode/src/altimate/tools/sql-check.ts`	622	A permission prompt for the population can skip a later denied predicate pattern.
`packages/opencode/src/altimate/tools/sql-check.ts`	190	`dblink()` can execute remote writes outside the local read-only transaction.
`packages/opencode/src/altimate/tools/sql-check.ts`	316	`pg_try_advisory_lock()` can persist a session-level lock on a pooled connection.

WARNING

File	Line	Issue
`packages/opencode/src/altimate/tools/sql-check.ts`	249	PostgreSQL parent-table estimates omit inherited child rows scanned by the probe.
`packages/opencode/src/altimate/tools/sql-check.ts`	286	SQLite partial-index statistics can understate a full table's scanned rows.
`packages/opencode/src/altimate/tools/sql-check.ts`	385	Timeout handling discards a local engine's in-memory or session-state loss warning.
`packages/opencode/src/altimate/tools/sql-check.ts`	224	A subquery or CTE LIMIT that bounds the population receives no caveat.

Files Reviewed (6 files)

packages/opencode/src/altimate/prompts/analyst.txt - 0 issues
packages/opencode/src/altimate/tools/sql-check.ts - 7 issues
packages/opencode/src/altimate/tools/sql-tokenize.ts - 0 issues
packages/opencode/test/agent/analyst-data-explorer.test.ts - 0 issues
packages/opencode/test/altimate/sql-check-postgres.test.ts - 0 issues
packages/opencode/test/altimate/sql-check-predicate-effect.test.ts - 0 issues

Fix these issues in Kilo Cloud

Review based on source and existing tests only; no code or tests were executed. Earlier active review comments were not duplicated.

_{Reviewed by gemini-4-argon · Input: 539.9K · Output: 2.4K · Cached: 2.2M}

_{Review guidance: REVIEW.md from base branch feat/analyst-harness-dab-2026-10}

…_effect` - Read-only classification: deny `pg_logical_emit_message` (its non-transactional form is written to WAL immediately and survives the rollback), bare `dblink` (the synchronous form runs its string argument on a remote connection outside the local read-only transaction) and every `pg_advisory_lock` / `pg_try_advisory_lock` / `pg_advisory_xact_lock` variant (session-level locks survive ROLLBACK and the session returns to the pool). Applies to the population and to every predicate; case-insensitive and schema-qualified spellings covered. - Permission: `PermissionNext.ask` evaluated patterns in order and returned a prompt on the first `ask`, so a later pattern with an explicit `deny` would execute once the earlier one was approved. It now evaluates every pattern before publishing the approval request (`upstream_fix`). - Local engines honour `readOnly`: SQLite runs the probe under a scoped `query_only` pragma restored afterwards; DuckDB runs it in a READ ONLY transaction that is rolled back, and refuses to start one while the caller has its own transaction open rather than aborting it. Previously the flag was silently ignored on both engines. - Regression tests for each denied function family, for the deny-before-prompt ordering, and for SQLite/DuckDB read-only enforcement (hidden sequence writes in a view and in a predicate subquery, pragma restoration after failure, and the active-transaction refusal). Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

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…te_effect pg_advisory_unlock, pg_advisory_unlock_shared and pg_advisory_unlock_all release session-level locks held by the pooled connection, and a read-only rollback does not undo that. The denylist now covers every pg_advisory_* / pg_try_advisory_* function; regression cases added for the three unlock variants. Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

… the predicate_effect branch Resolves the conflict in `packages/drivers/src/duckdb.ts` by keeping the shared-engine generation tracking from the base and this branch's `readOnly` flag on the engine call.

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…s in read-only `sql_check` sources The denylist named individual dblink functions, so `dblink_open`/`dblink_fetch`/`dblink_close` (a remote data-modifying cursor whose close commits) passed, and it omitted `pg_wal_replay_pause`/`pg_wal_replay_resume`, which change recovery state on a standby and are not undone by rollback. The list now matches `dblink\w*` and `pg_wal_replay_\w*`. Tests: dblink cursor open/fetch/close (incl. a data-modifying CTE), and both WAL replay controls, each rejected before query execution in plain, schema-qualified and commented spellings. Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

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…shaped calls - The permission request now includes the probe's AND-combined predicate expression and the fixed catalog lookups (`pg_operator`, `pg_proc`, `pg_type`, `duckdb_functions()`), so rules scoped to a joint condition or to catalog reads apply before anything executes. - Only reserved keywords that cannot name an unquoted function are skipped by call detection. `FILTER` and `OVER` count as clauses only right after a call's closing parenthesis. Unreserved names such as `range`, `rows`, `partition` and `within` are validated as calls, and `range` joins the pure allowlist so the catalog check still refuses a user-defined overload. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

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…predicate_effect` runs The permission request now mirrors execution: the PostgreSQL `pg_class` row estimate for a bare table is included, and each catalog lookup (operators, functions, casts, `duckdb_functions()`) is requested only when the SQL contains what that lookup checks. The estimate statement is shared between the request and the probe. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

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…' into feat/analyst-v10-probe

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…ect` pattern Permission patterns for the probe are built by one helper. For a bare PostgreSQL table it adds the row-estimate lookup followed by the probe, in the order the executed statement contains them, so a rule spanning the catalog and a predicate applies. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

…' into feat/analyst-v10-probe

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…eric fixes The mode validated caller-supplied SQL by its text, and each review round found another server-side definition that the text cannot reveal. It was opt-in, off by default and unused, so it is removed with its config key, prompt sentence and tests. Kept, with regression tests: permission requests evaluate every pattern before prompting, PostgreSQL forwards bind parameters on both query paths, SQLite and DuckDB honour `readOnly`, tokenizer fixes for shared read validation, and readable `sql_check` validation errors. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

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anandgupta42 and others added 2 commits October 12, 2026 12:54

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Merge remote-tracking branch 'origin/feat/analyst-harness-dab-2026-10…

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…' into feat/analyst-v10-probe

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anandgupta42 and others added 2 commits October 12, 2026 16:28

merge: bring the harness base (feat/analyst-harness-dab-2026-10) into…

9fce7ba

… the predicate_effect branch Resolves the conflict in `packages/drivers/src/duckdb.ts` by keeping the shared-engine generation tracking from the base and this branch's `readOnly` flag on the engine call.

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Merge remote-tracking branch 'origin/feat/analyst-harness-dab-2026-10…

866aa63

…' into feat/analyst-v10-probe

anandgupta42 changed the title ~~feat(analyst): sql_check predicate_effect reports what each filter removes~~ refactor(sql-check): drop predicate_effect; keep read-only, bind and permission fixes Oct 15, 2026

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anandgupta42 commented Oct 12, 2026 •

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codex · `bf2d1d70`

codex · `e64a7d03`

codex · `713bc962`

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